Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs10013390 chr4:140262876 A/T 2.32E-5 512 20.83 26.8 18.2 KM Plot
HNSC rs10173883 chr2:100100848 A/C 1.79E-6 514 22.27 20.2 7.17 KM Plot
HNSC rs10175852 chr2:100055033 C/A 2.94E-6 515 22.42 20.15 7.17 KM Plot
HNSC rs10176205 chr2:100100646 T/C 1.79E-6 514 22.27 20.2 7.17 KM Plot
HNSC rs10179435 chr2:100056332 C/T 2.94E-6 515 22.42 20.15 7.17 KM Plot
HNSC rs10179697 chr2:100101851 T/C 3.53E-5 514 22.2 20.77 9.6 KM Plot
HNSC rs10180138 chr2:100074596 G/C 2.59E-6 512 22.42 20.1 7.17 KM Plot
HNSC rs10207435 chr2:100060304 T/G 2.94E-6 515 22.42 20.15 7.17 KM Plot
HNSC rs10210257 chr2:100066845 T/C 2.94E-6 515 22.42 20.15 7.17 KM Plot
HNSC rs10210346 chr2:100067097 A/C 2.94E-6 515 22.42 20.15 7.17 KM Plot
HNSC rs1026184 chr4:140271887 C/G 1.93E-5 509 20.78 26.72 18.2 KM Plot
HNSC rs1043656 chr12:42853350 A/G 3.68E-5 509 21.93 22.78 16.37 KM Plot
HNSC rs10466193 chr10:111677201 C/T 2.81E-5 509 26.8 22.1 16.63 KM Plot
HNSC rs10496337 chr2:100047662 C/T 4.55E-6 512 22.33 19.72 7.17 KM Plot
HNSC rs1054691 chr21:48080030 T/C 4.83E-9 512 21.5 21.02 2.73 KM Plot